PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619303.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 334aa    MW: 37990.4 Da    PI: 7.6173
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619303.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+d++ ++G+g +W + ++++g++R++k+c++rw++yl
   XP_013619303.1 14 KGPWSPEEDVKLKDYIDKYGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP

2Myb_DNA-binding39.41.4e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd +++++    G++ W+ Ia+ ++ gRt++++k++w++
   XP_013619303.1  69 GGFSEEEDSIILNLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.519962IPR017930Myb domain
SuperFamilySSF466894.9E-2711109IPR009057Homeodomain-like
SMARTSM007172.6E-121364IPR001005SANT/Myb domain
PfamPF002492.8E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-241569IPR009057Homeodomain-like
CDDcd001671.47E-81662No hitNo description
PROSITE profilePS5129421.45263117IPR017930Myb domain
SMARTSM007178.2E-1267115IPR001005SANT/Myb domain
PfamPF002495.0E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2370117IPR009057Homeodomain-like
CDDcd001672.95E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDVKLKDYID KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDSIIL NLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGR  120
QKQMNRQDSI THSNENNISS NNNNNKSPQN LSNSALERLQ LHMQLQNLQS PFSSFYNNPI  180
LWPKLHPLLQ TTPDQNSKLA SQETLHPLGV NFVHQKSHIN LAEINNGASP IYSDNVEQAL  240
NPANEFQPNF GFSQDLQLDN HNMDLMNRSC GSKEWFQVGN EFGPTNDSSW WSEEVELERK  300
TMSSSSWGSA SVLDQTTEGV HILQDYAQMS YHSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141177108B-MYB
1h8a_C3e-241411727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0628780.0AF062878.1 Arabidopsis thaliana putative transcription factor (MYB36) mRNA, complete cds.
GenBankAY5196400.0AY519640.1 Arabidopsis thaliana MYB transcription factor (At5g57620) mRNA, complete cds.
GenBankBT0303310.0BT030331.1 Arabidopsis thaliana unknown protein (At5g57620) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619303.10.0PREDICTED: transcription factor RAX3-like
SwissprotQ9FKL20.0MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A0D3ALF10.0A0A0D3ALF1_BRAOL; Uncharacterized protein
STRINGBra020428.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78982639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.10.0myb domain protein 36